PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G05420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 392aa    MW: 38824.8 Da    PI: 5.9242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G05420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.8e-12216261555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  OBART06G05420.1 216 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 261
                      99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.26E-13209265No hitNo description
SuperFamilySSF474597.46E-17209271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16213270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9216261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MQPSSRDTVA GGGGEGTQDD FFDQMLSTLP SAWADLGGGG GGAAGKSPWE VDPAAAAAAA  60
SQVFDESALL ASRLRHHQIG GAGGGGGEKP VMLQLSELHR QAGGGEEDGS GAFSPLPLFT  120
DRTNVPPREE MEGGFKSPNA AAGGEHALFN GFGVHGGSGG AGQPPFGQGG SMSGQSFGGP  180
AASGGTAPVT SSGGGGTGPP RQQRVRARRG QATDPHSIAE RLRRERIAER MKSLQELVPN  240
ANKTDKASML DEIIDYVKFL QLQVKVLSMS RLGGAAGMAP LVASMSSEGN SNGSSNGGGG  300
KASKGGTGGE GGGGGGGGGG GTGGGMRVTE QQVAKMMEED MGTAMQYLQG KGLCLMPISL  360
ASAISSATSP AAMSNGDDPR HAKADSGAGG TQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225RLRRER
2306321TGGEGGGGGGGGGGGT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0059190.0AP005919.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0554A06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642979.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-75BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D3GDJ90.0A0A0D3GDJ9_9ORYZ; Uncharacterized protein
STRINGBGIOSGA021777-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-35LJRHL1-like 2